PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN17702.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 213aa    MW: 22992.9 Da    PI: 9.5989
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN17702.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.54.6e-3373129158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq+Rakle+++kl +ksrkpylheSRh+hAl+R RgsgGrF
  KHN17702.1  73 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKSRKPYLHESRHRHALNRVRGSGGRF 129
                 57****************************.**************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.4E-3671132IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.83472132IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.7E-2875129IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.0E-257597IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607797IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.0E-25106129IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKPFLSNHTD SMYNCSQVGC SHPMAHTSYP CGDPYFGSSI VAYGPQAINQ QMVPQMLGLA  60
STRIALPVDL AEDGPIYVNA KQYHGILRRR QSRAKLEAQN KLIKSRKPYL HESRHRHALN  120
RVRGSGGRFL SAKQLPQSNA ELVTDAYQKK DASEAENHPS STGENASITF TAISALTSMS  180
SNSVNFPNMA GSSQCSGGLT FGAGALQCTS VGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-2473134263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0965760.0BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240022.11e-159uncharacterized protein LOC100777544
RefseqXP_006600160.11e-159PREDICTED: uncharacterized protein LOC100777544 isoform X1
RefseqXP_014624789.11e-159PREDICTED: uncharacterized protein LOC100777544 isoform X1
SwissprotQ9LNP67e-39NFYA8_ARATH; Nuclear transcription factor Y subunit A-8
TrEMBLA0A0B2QD551e-159A0A0B2QD55_GLYSO; Nuclear transcription factor Y subunit A-8
TrEMBLC6TG321e-159C6TG32_SOYBN; Uncharacterized protein
STRINGGLYMA17G05920.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17590.44e-40nuclear factor Y, subunit A8
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]